Data download

Some of the processed data contained within PhenoScanner are available to download. These include:

  • dbSNP 147 with variant annotation from VEP.
  • Linkage disequilibrium statistics from 1000 Genomes.
  • A subset of the processsed GWAS datasets.


To obtain access to the data, please email In downloading the data, you agree to the following terms and conditions:

  • You will cite the PhenoScanner paper in any publication or presentation where you use these datasets.
  • You will cite the original paper where the results were obtained, including the references for the linkage disequilibrium statistics and variant & phenotype mappings where used (table of studies).
  • You will follow any additional terms and conditions of the data (table of studies).


Once access is granted, you will be provided with a username and password to login below and download the relevant data.